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Computational phylogenetics
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#	Item
21	Local Packing Density Is the Main Structural Determinant of the Rate of Protein Sequence Evolution at Site Level Add to Reading List Source URL: www.ncbi.nlm.nih.gov Language: English Biology Bioinformatics Protein structure Computational phylogenetics Nucleic acids Solvents Nucleic acid sequence Substitution matrix Sequence alignment Protein domain STING Solvent exposure
22	Table of Contents Use Cases (Target Problems)...........................................................................................................................1 Family alignment: identify homologues, generate fa Add to Reading List Source URL: informatics.nescent.org Language: English - Date: 2016-04-13 13:52:16 Biology Bioinformatics Computational phylogenetics Genetics Population genetics Molecular biology Protein structure Sequence alignment Single-nucleotide polymorphism BLAST Protein superfamily Conserved sequence
23	CSE 584A Class 21 Jeremy Buhler April 11, 2016 1 Add to Reading List Source URL: classes.engineering.wustl.edu Language: English - Date: 2016-04-11 07:29:21 Computational phylogenetics Bioinformatics Biology Tree alignment BLAST SmithWaterman algorithm Multiple sequence alignment NeedlemanWunsch algorithm
24	1 Large-scale multiple sequence alignment and phylogeny estimation Tandy Warnow1,∗ 1 Department of Computer Science, University of Texas at Austin, Austin, Add to Reading List Source URL: web.engr.illinois.edu Language: English - Date: 2014-08-30 16:01:16 Computational phylogenetics Bioinformatics Biology Multiple sequence alignment Sequence alignment Phylogenetic tree Maximum parsimony Structural alignment Protein superfamily Clustal Phylo BAli-Phy
25	LNCSFixed Parameter Tractability of Binary Near-Perfect Phylogenetic Tree Reconstruction Add to Reading List Source URL: www.cs.tau.ac.il Language: English - Date: 2009-01-01 08:42:54 Computational complexity theory Graph theory Mathematics Phylogenetics NP-complete problems Computational phylogenetics Analysis of algorithms Probabilistic complexity theory Randomized algorithm Steiner tree problem Algorithm Maximum parsimony
26	Simple and Fast Inverse Alignment John Kececioglu and Eagu Kim Department of Computer Science, The University of Arizona, Tucson, AZ 85721, USA {kece, egkim}@cs.arizona.edu Add to Reading List Source URL: www.cs.arizona.edu Language: English - Date: 2006-04-28 03:36:43 Computational phylogenetics Mathematical optimization Operations research Mathematics Linear programming Bioinformatics Convex optimization Sequence alignment SmithWaterman algorithm Ellipsoid method Linear inequality Inequality
27	Parallelizing SuperFine Diogo Telmo Neves Tandy Warnow João Luís Sobral Add to Reading List Source URL: tandy.cs.illinois.edu Language: English - Date: 2014-08-30 15:57:58 Phylogenetics Biology Supertree Maximum parsimony Computational phylogenetics Polytomy Phylogenetic tree Cladistics Multiple sequence alignment
28	Microsoft PowerPoint - 第4章-进化树.pptx Add to Reading List Source URL: bioinfo.ict.ac.cn Language: English Markov models Bioinformatics Computational phylogenetics Models of DNA evolution Phylogenetics Biology Markov chain Mathematical analysis
29	Genome Informatics 12: 204–Bioinformatics Issues for Automating the Annotation of Genomic Sequences∗ Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2002-01-17 03:51:05 Bioinformatics Biology Biological databases Computational phylogenetics Biotechnology National Institutes of Health BLAST Public-domain software National Center for Biotechnology Information GenBank Sequence database Expressed sequence tag
30	Neural Systems & Behavior Laboratory Experiments for the Integrative Molecular Neuroscience Module 1 Add to Reading List Source URL: www.mbl.edu Language: English - Date: 2014-07-01 11:14:50 Biology Bioinformatics Molecular biology Computational phylogenetics National Center for Biotechnology Information Neuroethology BLAST Multiple sequence alignment Sequence alignment Gene expression FASTA Nucleic acid sequence